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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16118901_16119880_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16118901 - 16119880
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTATTGGAAAT
Flanking Amino Acid:
ESKANFAKITRTEGLHVSHV
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
86.8
22.8
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
43.6
-0.7
2.9
58.5
40.4
Minor BPS
45.5
-0.2
2.1
70.27
40.6

Associated Gene:

Gene:
SERPINE2
Ensembl Gene ID:
ENSAPLG00000008646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009047
16116606 - 16127103
10498
ENSAPLT00000035442
16116606 - 16127103
10498
ENSAPLT00000027499
16116606 - 16149602
32997
ENSAPLT00000026868
16116606 - 16184479
67874
ENSAPLT00000046969
16116606 - 16127103
10498
ENSAPLT00000018458
16116606 - 16136305
19700
ENSAPLT00000042190
16116606 - 16129072
12467