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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16119982_16120127_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16119982 - 16120127
Intron Length:
146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTGTTTATTC
Flanking Amino Acid:
VAKRVQVILPKFTAVAETDL
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
68.2
0.41
1
68.8
37.3
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
57.3
0.21
2
73.5
38.4

Associated Gene:

Gene:
SERPINE2
Ensembl Gene ID:
ENSAPLG00000008646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009047
16116606 - 16127103
10498
ENSAPLT00000035442
16116606 - 16127103
10498
ENSAPLT00000027499
16116606 - 16149602
32997
ENSAPLT00000026868
16116606 - 16184479
67874
ENSAPLT00000046969
16116606 - 16127103
10498
ENSAPLT00000018458
16116606 - 16136305
19700
ENSAPLT00000042190
16116606 - 16129072
12467