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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16124330_16126091_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16124330 - 16126091
Intron Length:
1762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTAAATT
Flanking Amino Acid:
SVNGIGSTPKGVGKALKKIN
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.8
78.8
35.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.5
0.42
1
63.5
38.2
Minor 5ss
33
-1.9
3.1
41.3
45.2
Minor BPS
69
0.68
1.6
84.08
37.1

Associated Gene:

Gene:
SERPINE2
Ensembl Gene ID:
ENSAPLG00000008646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009047
16116606 - 16127103
10498