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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16124330_16126827_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16124330 - 16126827
Intron Length:
2498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTCAGTGAT
5'SS Class:
major
3'SS Sequence:
TCTTTCCGACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTCTAAATT
Flanking Amino Acid:
LTTMMRYSVNGVGKALKKIN
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1.3
74.1
36.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.5
0.42
1
63.5
38.2
Minor 5ss
29.9
-2.3
3.1
37.8
41.1
Minor BPS
69
0.68
1.6
84.08
37.1

Associated Gene:

Gene:
SERPINE2
Ensembl Gene ID:
ENSAPLG00000008646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042190
16116606 - 16129072
12467
ENSAPLT00000027499
16116606 - 16149602
32997
ENSAPLT00000026868
16116606 - 16184479
67874
ENSAPLT00000018458
16116606 - 16136305
19700