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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16127104_16149541_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16127104 - 16149541
Intron Length:
22438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGGAG
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAC
U12 Branch Point Sequence:
GTTTTCTTACAG
Flanking Amino Acid:
RVGVREPLLKGYSTPEIMNW
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60
40.8
Major BPS
65.1
0.38
1
57
39.5
Major PPT
89.6
0.89
0.7
84.2
30.9
Minor 5ss
21.7
-3.3
3.4
27.2
44.5
Minor BPS
57.3
0.09
1.8
64.96
42.7

Associated Gene:

Gene:
SERPINE2
Ensembl Gene ID:
ENSAPLG00000008646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027499
16116606 - 16149602
32997