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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16197634_16198696_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16197634 - 16198696
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCTCCTCAACA
Flanking Amino Acid:
DYEGNKILLQVRDSPRQSET
Intron Amino Acid Position:
973

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.7
0.62
0.8
73.7
29.9
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
77
0.84
1.5
83.78
36.8

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047387
16196651 - 16263692
67042
ENSAPLT00000046797
16196651 - 16263692
67042