Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16199438_16211818_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16199438 - 16211818

Intron Length:

12381

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGCTTG

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CACCAAT

U12 Branch Point Sequence:

CGAGCACCAATT

Flanking Amino Acid:

KMQHNVLVAEGSFAMGDRGD

Intron Amino Acid Position:

726

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

69.9

43.4

Major BPS

51.7

0.04

1.2

60.3

34.2

Major PPT

84.4

0.77

0.7

80.5

31.5

Minor 5ss

46.4

-0.4

3.1

64.2

47.3

Minor BPS

39.4

-0.7

51.92

42.4

Associated Gene:

Gene:

CUL3

Ensembl Gene ID:

ENSAPLG00000008361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047387

16196651 - 16263692

67042

ENSAPLT00000046797

16196651 - 16263692

67042