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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16211965_16213660_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16211965 - 16213660
Intron Length:
1696

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTCTTGAAG
Flanking Amino Acid:
SKLHRVKIQTVAAKQGESDP
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.4
39.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.8
0.78
0.9
87.3
23.7
Minor 5ss
31.6
-2.1
3.1
31.8
42.6
Minor BPS
70.3
0.49
1.5
75.29
36.5

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034917
16210692 - 16263692
53001
ENSAPLT00000025740
16210997 - 16257175
46179
ENSAPLT00000008732
16210997 - 16257527
46531
ENSAPLT00000047387
16196651 - 16263692
67042
ENSAPLT00000046797
16196651 - 16263692
67042