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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16213848_16220172_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16213848 - 16220172
Intron Length:
6325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTGAT
U12 Branch Point Sequence:
TGGCTGTAAACT
Flanking Amino Acid:
NATFYGPVKKEIQQETDIPE
Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
74.7
0.61
0.9
63.4
35.6
Major PPT
90.6
0.91
0.7
89.2
27.2
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
45.6
-0.2
2.3
65.34
45.2

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047387
16196651 - 16263692
67042