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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16219157_16220172_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16219157 - 16220172
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTGTTTTTAAAA
Flanking Amino Acid:
NATFYGPVKKEDGSEVGVGG
Intron Amino Acid Position:
579

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
78
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.4
0.48
1
67.6
41.7
Minor 5ss
37.8
-1.4
3.5
55
49.2
Minor BPS
64.3
0.44
1.4
68.67
37.7

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008732
16210997 - 16257527
46531
ENSAPLT00000046797
16196651 - 16263692
67042
ENSAPLT00000034917
16210692 - 16263692
53001
ENSAPLT00000025740
16210997 - 16257175
46179