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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16220270_16220605_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16220270 - 16220605
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAATT
Flanking Amino Acid:
APRHAFEIFRRFYLAKHSGR
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
80.9
0.7
0.9
74.6
39.4
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
66.8
0.61
2
89.07
35.8

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034917
16210692 - 16263692
53001
ENSAPLT00000025740
16210997 - 16257175
46179
ENSAPLT00000008732
16210997 - 16257527
46531
ENSAPLT00000047387
16196651 - 16263692
67042
ENSAPLT00000046797
16196651 - 16263692
67042