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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16220731_16223118_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16220731 - 16223118
Intron Length:
2388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CAATTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTCTTCCAATT
Flanking Amino Acid:
EFRQHLQTTGVSLGGVDLTV
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
68.7
36.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
71.6
0.49
0.9
65.7
40.4
Minor 5ss
30.3
-2.3
3.2
31.5
42.2
Minor BPS
49.2
0.02
1.8
73.9
37.2

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046797
16196651 - 16263692
67042
ENSAPLT00000034917
16210692 - 16263692
53001
ENSAPLT00000025740
16210997 - 16257175
46179
ENSAPLT00000008732
16210997 - 16257527
46531
ENSAPLT00000047387
16196651 - 16263692
67042