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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16225975_16228796_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16225975 - 16228796
Intron Length:
2822

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTGAAA
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTAAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTTTTTAAAG
Flanking Amino Acid:
EGKNPVDYIQGLLDLKSRFD
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.5
1.1
67.7
39
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.6
0.76
0.9
85.6
26.3
Minor 5ss
30.3
-2.3
3.3
39.1
46.3
Minor BPS
72.6
0.57
1.4
75.95
35.7

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046797
16196651 - 16263692
67042
ENSAPLT00000034917
16210692 - 16263692
53001
ENSAPLT00000025740
16210997 - 16257175
46179
ENSAPLT00000008732
16210997 - 16257527
46531
ENSAPLT00000047387
16196651 - 16263692
67042