Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16228943_16230563_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16228943 - 16230563

Intron Length:

1621

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAT

U12 Branch Point Sequence:

GTGTCCTGCATA

Flanking Amino Acid:

VHMLKNGKTEDLACMYKLFS

Intron Amino Acid Position:

304

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.9

0.92

0.9

72.5

37.3

Major BPS

86.1

0.9

0.7

85.7

22.9

Major PPT

92.1

0.95

0.6

88.1

21.8

Minor 5ss

33.2

-1.9

3.1

43.3

43.8

Minor BPS

51.3

0.03

1.9

64.88

41.8

Associated Gene:

Gene:

CUL3

Ensembl Gene ID:

ENSAPLG00000008361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034917

16210692 - 16263692

53001

ENSAPLT00000025740

16210997 - 16257175

46179

ENSAPLT00000008732

16210997 - 16257527

46531

ENSAPLT00000047387

16196651 - 16263692

67042

ENSAPLT00000046797

16196651 - 16263692

67042