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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16232240_16233387_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16232240 - 16233387
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GATTTCTCAAGT
Flanking Amino Acid:
ARERKGEVVDRGAIRNACQM
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
33.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78.8
0.65
1
76.5
37.2
Minor 5ss
39.7
-1.2
3.1
56.6
47.5
Minor BPS
56.5
0.28
1.9
74
42.5

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046797
16196651 - 16263692
67042
ENSAPLT00000034917
16210692 - 16263692
53001
ENSAPLT00000025740
16210997 - 16257175
46179
ENSAPLT00000008732
16210997 - 16257527
46531
ENSAPLT00000047387
16196651 - 16263692
67042