Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16233549_16240037_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16233549 - 16240037

Intron Length:

6489

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGGGTGTT

5'SS Class:

major

3'SS Sequence:

GCCTTCATTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTCAC

U12 Branch Point Sequence:

TATGCCTTCATT

Flanking Amino Acid:

VMIRDILMYMDRVYVQQNNV

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

36.6

Major BPS

81.3

0.78

0.8

83.4

26.1

Major PPT

0.5

0.9

66.1

34.4

Minor 5ss

31.9

-2.1

3.6

45.5

Minor BPS

63.6

0.51

1.9

80.78

41.5

Associated Gene:

Gene:

CUL3

Ensembl Gene ID:

ENSAPLG00000008361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034917

16210692 - 16263692

53001

ENSAPLT00000025740

16210997 - 16257175

46179

ENSAPLT00000008732

16210997 - 16257527

46531

ENSAPLT00000047387

16196651 - 16263692

67042

ENSAPLT00000046797

16196651 - 16263692

67042