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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16248709_16257434_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16248709 - 16257434
Intron Length:
8726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGAGTTG
5'SS Class:
major
3'SS Sequence:
TCTATTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGATTCTAAACA
Flanking Amino Acid:
VGLVCSWHLQMTMDEKYVNS
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
59.8
41.6
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
81.7
0.71
0.9
75.6
38.1
Minor 5ss
32.9
-2
3.7
45.4
49.7
Minor BPS
64.6
0.45
1.7
72.6
39.2

Associated Gene:

Gene:
CUL3
Ensembl Gene ID:
ENSAPLG00000008361
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008732
16210997 - 16257527
46531