Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16275918_16281842_R

Intron Information:

Intron Rank:

139153

Intron Class:

major

Intron Phase:

Intron Coordinates:

16275918 - 16281842

Intron Length:

5925

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GAGTAAT

U12 Branch Point Sequence:

GTCTGAGTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

74.4

35.9

Major BPS

58.9

0.22

1.4

61.7

43.1

Major PPT

81.9

0.72

0.7

76.4

25.6

Minor 5ss

34.5

-1.8

40.9

39.3

Minor BPS

43.5

-0.4

2.5

65.31

45.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000022335

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017504

16275536 - 16282527

6992