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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16283234_16283595_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16283234 - 16283595
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTGTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
CCATCTTCATGC
Flanking Amino Acid:
MYGFINTCLKS
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
64.9
41.1
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
78.3
0.64
0.9
73.2
37.1
Minor 5ss
26.8
-2.7
3
28.2
38.6
Minor BPS
42.3
-0.6
2
46.51
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008050
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043468
16283074 - 16301658
18585