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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16321535_16322135_R

Intron Information:

Intron Rank:
56
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16321535 - 16322135
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATGAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATGAAA
Flanking Amino Acid:
NISLNTIAKSDCIQGGFSKT
Intron Amino Acid Position:
2191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
0.9
72.1
33.4
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
61.9
0.27
1.2
64.7
39.6
Minor 5ss
46.7
-0.3
2.4
56
43.5
Minor BPS
60.1
0.31
1.7
76.53
33.8

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000037117
16321467 - 16426444
104978
ENSAPLT00000031607
16321467 - 16446165
124699
ENSAPLT00000043637
16321467 - 16446165
124699