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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16321535_16324035_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16321535 - 16324035
Intron Length:
2501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATCA
5'SS Class:
major
3'SS Sequence:
TTTCTATGAAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTTCTATGAAA
Flanking Amino Acid:
SELSAVMNEQIAYKEDSAKQ
Intron Amino Acid Position:
2144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
61.9
0.27
1.2
64.7
39.6
Minor 5ss
34.6
-1.8
2.8
40.7
45
Minor BPS
60.1
0.31
1.7
76.53
33.8

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000006735
16321415 - 16463588
142174