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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16322212_16324035_R

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16322212 - 16324035
Intron Length:
1824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTAGATCA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTGACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTTTCTGACA
Flanking Amino Acid:
SELSAVMNEQLCHGPCLYSF
Intron Amino Acid Position:
2166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1.1
72.5
32.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
82.6
0.73
0.9
79.9
32.3
Minor 5ss
34.6
-1.8
2.8
40.7
45
Minor BPS
57.4
0.23
1.6
70.06
36.4

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000037117
16321467 - 16426444
104978
ENSAPLT00000031607
16321467 - 16446165
124699
ENSAPLT00000043637
16321467 - 16446165
124699