About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16324175_16324487_R

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16324175 - 16324487
Intron Length:
313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTGCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
AATATTTGTATG
Flanking Amino Acid:
NQVKLLKEIFRQFADACGHA
Intron Amino Acid Position:
2097

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79.3
0.66
0.9
73.9
36.8
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
42
-0.7
1.7
43.81
36

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978
ENSAPLT00000031607
16321467 - 16446165
124699