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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16324589_16325268_R

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16324589 - 16325268
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
ATTTCTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTACAC
U12 Branch Point Sequence:
CTCTCTACACCT
Flanking Amino Acid:
LKLQGSVSVKVNAGPMAYAR
Intron Amino Acid Position:
2064

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
60.3
0.26
1.1
68.9
36.5
Major PPT
81.5
0.71
0.8
73.9
36.1
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
45
-0.3
2
64.42
46.2

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031607
16321467 - 16446165
124699
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978