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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16325460_16327689_R

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16325460 - 16327689
Intron Length:
2230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTCTG
5'SS Class:
major
3'SS Sequence:
TGCTTTCGAGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
TTGATGCTAATA
Flanking Amino Acid:
EQCKRRTILTTSHLFPYVKK
Intron Amino Acid Position:
2000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
68.1
42.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
65.3
0.34
1
62.9
38.4
Minor 5ss
45.6
-0.5
2.8
58.7
40.1
Minor BPS
44.7
-0.4
2.3
59.96
40.5

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978
ENSAPLT00000031607
16321467 - 16446165
124699
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802