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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16327901_16328310_R

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16327901 - 16328310
Intron Length:
410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CACTGTTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTAAATGAATT
Flanking Amino Acid:
NVKIIQDSNKVNPKDLDPKY
Intron Amino Acid Position:
1930

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
0.8
76.8
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
66.7
0.38
1
60.5
39.2
Minor 5ss
27.4
-2.6
2.7
30.4
43
Minor BPS
47.2
-0.1
1.9
68.15
42.3

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031607
16321467 - 16446165
124699
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978