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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16334332_16335312_R

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16334332 - 16335312
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTAACGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAC
U12 Branch Point Sequence:
TGTCTCTTAACG
Flanking Amino Acid:
AVFEKQRDFKRLSDLYYDIH
Intron Amino Acid Position:
1843

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.2
27.2
Major BPS
77.1
0.67
1
77.9
32.2
Major PPT
70.1
0.45
0.9
66.7
33.1
Minor 5ss
44.5
-0.6
2.8
60
38.4
Minor BPS
73.8
0.61
1.3
73.56
38.5

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031607
16321467 - 16446165
124699
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978