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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16337533_16337863_R

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16337533 - 16337863
Intron Length:
331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATCA
5'SS Class:
strong_major
3'SS Sequence:
TACGCTATCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGTGTACTAATA
Flanking Amino Acid:
ALIAEYLKRKGYWKMEKICT
Intron Amino Acid Position:
1733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.4
35.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
64.4
0.32
0.9
58
36.9
Minor 5ss
37.8
-1.4
3
40.6
45.1
Minor BPS
44.9
-0.3
1.9
56.02
36.9

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978
ENSAPLT00000031607
16321467 - 16446165
124699