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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16340359_16342029_R

Intron Information:

Intron Rank:
42
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16340359 - 16342029
Intron Length:
1671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCAATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TTTTTCCCAATA
Flanking Amino Acid:
FAALRLFVGKFPSAFFQGQA
Intron Amino Acid Position:
1544

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.1
81.8
38.5
Major BPS
66.4
0.41
1
61.3
37
Major PPT
78.1
0.63
0.8
75.2
28.7
Minor 5ss
44.9
-0.5
2.6
59.7
44.8
Minor BPS
58.5
0.26
1.8
76.03
35.2

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031607
16321467 - 16446165
124699
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978