About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16349434_16350437_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16349434 - 16350437
Intron Length:
1004

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCAAAATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTATTTCAAAA
Flanking Amino Acid:
FLFNINTSNQGSRDDLSTAG
Intron Amino Acid Position:
1230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.7
34.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
70.6
0.46
1
63.5
40.8
Minor 5ss
40.2
-1.1
3.1
59.2
45.2
Minor BPS
54.7
0.15
1.6
69.29
36.7

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978
ENSAPLT00000031607
16321467 - 16446165
124699