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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16350850_16351249_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16350850 - 16351249
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
CATACATTAATT
Flanking Amino Acid:
SESTQDYRTSDIPEYTLTNE
Intron Amino Acid Position:
1132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
70.5
33.4
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
72.2
0.5
1
71.1
38.8
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
61.9
0.45
1.7
75.33
41.2

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031061
16321415 - 16446165
124751
ENSAPLT00000043637
16321467 - 16446165
124699
ENSAPLT00000027098
16321415 - 16446165
124751
ENSAPLT00000042762
16321467 - 16468268
146802
ENSAPLT00000006735
16321415 - 16463588
142174
ENSAPLT00000037117
16321467 - 16426444
104978
ENSAPLT00000031607
16321467 - 16446165
124699