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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16369363_16371777_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16369363 - 16371777
Intron Length:
2415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTAAACTAAAGT
Flanking Amino Acid:
SDEEGAKPLKVKIELPTQLH
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
74
38.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
85.3
0.8
0.8
82.5
33.5
Minor 5ss
34.1
-1.8
3.2
46.7
48.6
Minor BPS
47.9
-0
2.1
70.66
45.6

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027098
16321415 - 16446165
124751