Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16388860_16390478_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16388860 - 16390478

Intron Length:

1619

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGAGTG

5'SS Class:

strong_major

3'SS Sequence:

CCCCTTTTTCAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAAAAAT

U12 Branch Point Sequence:

CCCTTTTTCAAG

Flanking Amino Acid:

KSADLTDLKLDPADASVNDD

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

71.6

38.4

Major BPS

0.1

59.7

32.6

Major PPT

71.5

0.48

69.8

34.4

Minor 5ss

34.2

-1.8

3.5

44.2

44.6

Minor BPS

43.8

-0.6

1.9

42.62

43.5

Associated Gene:

Gene:

DOCK10

Ensembl Gene ID:

ENSAPLG00000006337

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006735

16321415 - 16463588

142174

ENSAPLT00000037117

16321467 - 16426444

104978

ENSAPLT00000031607

16321467 - 16446165

124699

ENSAPLT00000031061

16321415 - 16446165

124751

ENSAPLT00000043637

16321467 - 16446165

124699

ENSAPLT00000027098

16321415 - 16446165

124751

ENSAPLT00000042762

16321467 - 16468268

146802