Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16396318_16401250_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16396318 - 16401250

Intron Length:

4933

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACA|GTAAGATCT

5'SS Class:

major

3'SS Sequence:

CCTCTTTTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

AAGTAAATAATT

Flanking Amino Acid:

QYSEDFRHLPQNECRPEKLP

Intron Amino Acid Position:

131

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.9

0.54

69.2

36.2

Major BPS

74.5

0.61

79.6

29.1

Major PPT

82.9

0.74

0.7

76.2

32.4

Minor 5ss

42.8

-0.8

3.1

63.5

41.4

Minor BPS

45.7

-0.2

63.25

40.4

Associated Gene:

Gene:

DOCK10

Ensembl Gene ID:

ENSAPLG00000006337

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031061

16321415 - 16446165

124751

ENSAPLT00000043637

16321467 - 16446165

124699

ENSAPLT00000027098

16321415 - 16446165

124751

ENSAPLT00000042762

16321467 - 16468268

146802

ENSAPLT00000006735

16321415 - 16463588

142174

ENSAPLT00000037117

16321467 - 16426444

104978

ENSAPLT00000031607

16321467 - 16446165

124699