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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16415486_16426339_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16415486 - 16426339
Intron Length:
10854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
ATTACCTGATCT
Flanking Amino Acid:
NRGEIHRLSCQEKPKLLEPL
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.3
68.8
43.8
Major BPS
70
0.5
1
59.3
39.1
Major PPT
93.1
0.97
0.6
88.4
21.4
Minor 5ss
34.8
-1.7
2.8
37.9
40
Minor BPS
60.6
0.41
1.8
80.64
40.5

Associated Gene:

Gene:
DOCK10
Ensembl Gene ID:
ENSAPLG00000006337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037117
16321467 - 16426444
104978