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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16469271_16474250_F

Intron Information:

Intron Rank:
130392
Intron Class:
major
Intron Phase:
Intron Coordinates:
16469271 - 16474250
Intron Length:
4980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTCCTC
5'SS Class:
major
3'SS Sequence:
TTTTATTCTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TACATTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
61.6
43.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.3
0.64
1
79.9
32.1
Minor 5ss
48.6
-0.1
2.7
68.3
42.7
Minor BPS
48.6
-0.1
1.5
55.08
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020143
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025433
16468289 - 16474972
6684