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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16485623_16496448_F

Intron Information:

Intron Rank:
134696
Intron Class:
major
Intron Phase:
Intron Coordinates:
16485623 - 16496448
Intron Length:
10826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCCCCCTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.7
34.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
86.3
0.82
0.8
83.9
30.7
Minor 5ss
37.5
-1.4
2.8
52.1
44.3
Minor BPS
60.8
0.42
1.6
72.9
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022432
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023761
16485532 - 16500947
15416