Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1669661_1690203_R

Intron Information:

Intron Rank:

134298

Intron Class:

major

Intron Phase:

Intron Coordinates:

1669661 - 1690203

Intron Length:

20543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGGTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCTTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTCAT

U12 Branch Point Sequence:

CTTTGCTCATCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.9

1.01

0.8

88.6

27.1

Major BPS

79.7

0.74

79.6

35.6

Major PPT

91.1

0.93

0.7

89.2

26.8

Minor 5ss

42.7

-0.8

3.4

64.1

47.4

Minor BPS

49.7

0.06

2.2

75.91

46.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019537

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041191

1669497 - 1709983

40487