Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16696789_16720635_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

16696789 - 16720635

Intron Length:

23847

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCATCG

5'SS Class:

major

3'SS Sequence:

TTCCCCCTAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

TTCCCCCTAACA

Flanking Amino Acid:

RQASDLQPSQVTCMQWLQGD

Intron Amino Acid Position:

641

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.6

0.39

1.2

57.1

42.9

Major BPS

73.8

0.59

1.3

72.8

Major PPT

74.5

0.55

0.8

69.6

29.7

Minor 5ss

42.7

-0.8

3.1

57.4

46.7

Minor BPS

67.3

0.54

1.7

77.81

38.4

Associated Gene:

Gene:

NYAP2

Ensembl Gene ID:

ENSAPLG00000008664

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009012

16584319 - 16723299

138981

ENSAPLT00000009006

16585037 - 16723299

138263