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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16720910_16722938_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
16720910 - 16722938
Intron Length:
2029

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCAGC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTTAAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.3
58
47.1
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
83.5
0.75
0.9
85.6
26.4
Minor 5ss
43.9
-0.7
3
60.7
44
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
NYAP2
Ensembl Gene ID:
ENSAPLG00000008664
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009012
16584319 - 16723299
138981
ENSAPLT00000009006
16585037 - 16723299
138263