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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16749856_16749954_R

Intron Information:

Intron Rank:
132420
Intron Class:
major
Intron Phase:
Intron Coordinates:
16749856 - 16749954
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGTGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTCCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTTATATGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
74
30.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
83.8
0.76
0.8
77.4
31.5
Minor 5ss
38.1
-1.3
2.7
45.8
42.8
Minor BPS
50.5
0.09
1.7
71.61
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018509
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033863
16747921 - 16750105
2185