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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_16750840_16751324_F

Intron Information:

Intron Rank:
124498
Intron Class:
major
Intron Phase:
Intron Coordinates:
16750840 - 16751324
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GCATTGCTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
80.5
0.69
0.7
78.3
23.5
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
45.3
-0.3
2.3
57.12
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017124
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021144
16750303 - 16785547
35245