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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_1682578_1690203_R

Intron Information:

Intron Rank:
134290
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
1682578 - 1690203
Intron Length:
7626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
TGGCCTCCCTAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTTTTCTAAAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.8
88.6
27.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
58
0.18
1
60.6
35.6
Minor 5ss
42.7
-0.8
3.4
64.1
47.4
Minor BPS
59.7
0.38
2
79.89
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019537
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023173
1682486 - 1709983
27498