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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17030845_17030962_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17030845 - 17030962
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
CGTCTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGAAGAT
U12 Branch Point Sequence:
GATTTCGGCACT
Flanking Amino Acid:
YEGMAPGENKRFAADIISVL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
52.3
0.06
1.3
49.1
44.8
Major PPT
72.3
0.5
0.8
65.7
30.3
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
43.5
-0.4
2.4
66.34
44

Associated Gene:

Gene:
PSMD2
Ensembl Gene ID:
ENSAPLG00000008557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008899
17030668 - 17036151
5484