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Intron Name: Anas_platyrhynchos_platyrhynchos_9_17032100_17032273_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17032100 - 17032273

Intron Length:

174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

CTTGTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGATAAC

U12 Branch Point Sequence:

GAGGAGATAACC

Flanking Amino Acid:

NSNFLALARELDIMEPKVPD

Intron Amino Acid Position:

249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

66.6

39.6

Major BPS

53.9

0.1

1.2

55.8

37.4

Major PPT

0.74

0.8

77.2

31.6

Minor 5ss

31.2

-2.1

3.3

41.1

45.6

Minor BPS

38.7

-0.8

2.3

46.27

Associated Gene:

Gene:

PSMD2

Ensembl Gene ID:

ENSAPLG00000008557

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008899

17030668 - 17036151

5484