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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17032335_17032582_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17032335 - 17032582
Intron Length:
248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGGGCT
5'SS Class:
major
3'SS Sequence:
CGTCACTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TCATCCTGACGT
Flanking Amino Acid:
DIYKTHLENNRFGGSGSQVD
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.2
0.33
1.4
61.7
43
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
68.8
0.42
0.9
61.6
34.5
Minor 5ss
33.7
-1.9
3.7
52.4
44.6
Minor BPS
49.2
0.02
2.1
69.42
47

Associated Gene:

Gene:
PSMD2
Ensembl Gene ID:
ENSAPLG00000008557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008899
17030668 - 17036151
5484