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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17033004_17033332_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17033004 - 17033332
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTCTGCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TGCTGTGTGACG
Flanking Amino Acid:
YLYSSEDYIKSGALLACGIV
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
79.4
0.66
0.8
72.7
32.1
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
42.7
-0.7
2.4
50.34
44.5

Associated Gene:

Gene:
PSMD2
Ensembl Gene ID:
ENSAPLG00000008557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008899
17030668 - 17036151
5484