About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17034265_17034340_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17034265 - 17034340
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAT
U12 Branch Point Sequence:
ACCCGCTGATCC
Flanking Amino Acid:
NTLVDICAYAGSGNVLKVQQ
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
63.8
0.34
1.2
54.7
43.1
Major PPT
74.7
0.56
0.7
65.8
30.2
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
41.6
-0.6
2
46.77
42.3

Associated Gene:

Gene:
PSMD2
Ensembl Gene ID:
ENSAPLG00000008557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008899
17030668 - 17036151
5484