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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17034487_17034669_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17034487 - 17034669
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGGA
5'SS Class:
major
3'SS Sequence:
CGTGTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAG
U12 Branch Point Sequence:
GCTCCCTGCACT
Flanking Amino Acid:
ESSADMGAHQGVAVLGIALI
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.1
40.8
Major BPS
50.8
0.02
1.5
61
37.5
Major PPT
69.1
0.43
0.9
61.3
35.1
Minor 5ss
21.7
-3.3
3.4
28.5
43.8
Minor BPS
51.9
0.14
2
71.32
45

Associated Gene:

Gene:
PSMD2
Ensembl Gene ID:
ENSAPLG00000008557
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008899
17030668 - 17036151
5484