Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_17034754_17034907_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17034754 - 17034907

Intron Length:

154

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGGC

5'SS Class:

strong_major

3'SS Sequence:

CCCTCCCACGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GACTCAG

U12 Branch Point Sequence:

GGACCCGGGACT

Flanking Amino Acid:

EMALRTFGHLLRYGEPTLRR

Intron Amino Acid Position:

591

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

0.9

68.4

36.9

Major BPS

48.2

-0.1

1.6

57.3

41.7

Major PPT

67.1

0.39

0.8

61.3

27.8

Minor 5ss

27.7

-2.6

31.6

37.6

Minor BPS

44.2

-0.3

2.1

60.26

42.6

Associated Gene:

Gene:

PSMD2

Ensembl Gene ID:

ENSAPLG00000008557

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008899

17030668 - 17036151

5484